Information for 12-CGGCCGTCAA (Motif 19)

A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A A T G C A T C G A C T G A G T C A T G C C T A G
p-value:1e-9
log p-value:-2.123e+01
Information Content per bp:1.864
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif15.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.9 +/- 29.3bp
Average Position of motif in Background50.6 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2/MA0774.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGGCCGTCAA
--GCTGTCAA
 A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PH0141.1_Pknox2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGTCAA---
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CGGCCGTCAA----
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGTCAA---
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CGGCCGTCAA
--CCTGTCAA
 A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGTCAA---
AATTACCTGTCAATAC
 A C G T A C G T A C G T A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A A C G T A C G T A C G T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGTCAA---
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGGCCGTCAA
-GGCVGTTR-
 A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A
A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGTCAA---
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGGCCGTCAA-
-GGCCATTAAC
 A G T C A T C G A C T G A G T C A T G C A T C G C G A T A G T C T G C A C G T A A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C