Information for 11-GCAAGGCGTA (Motif 17)

T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A
Reverse Opposite:
G C A T C T G A G A T C A T C G A T G C A G T C A G C T C G A T C T A G A G T C
p-value:1e-9
log p-value:-2.184e+01
Information Content per bp:1.689
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.58%
Number of Background Sequences with motif930.7
Percentage of Background Sequences with motif1.98%
Average Position of motif in Targets47.6 +/- 25.6bp
Average Position of motif in Background50.1 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCAAGGCGTA-
-CAAGGHCANV
 T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A A C G T
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAAGGCGTA-----
CAAAGGCGTGGCCAG
 T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAAGGCGTA
NTCAAGGTCA-
 A C G T T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCAAGGCGTA
-CNAGGCCT-
 T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAAGGCGTA
BTCAAGGTCA-
 A C G T T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCAAGGCGTA
AAGGCAAGTGT--
 A C G T A C G T A C G T T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

PROX1/MA0794.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCAAGGCGTA---
-TAAGGCGTCTTG
 T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A A C G T A C G T A C G T
A C G T A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCAAGGCGTA
-CTAGGCCT-
 T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAAGGCGTA-----
NNNTNGGGCGTATNNTN
 A C G T A C G T T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAAGGCGTA
ACAAAG----
 T C A G A G T C G C T A T C G A C T A G A T C G T A G C C T A G G A C T C G T A
G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T