Information for 14-AGGGAAATTTCCC (Motif 13)

C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
Reverse Opposite:
C T A G A C T G A T C G C T G A T C G A G T C A G C A T A C G T A C G T T A G C G T A C G A T C C G A T
p-value:1e-6
log p-value:-1.430e+01
Information Content per bp:1.666
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif135.6
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets45.5 +/- 24.2bp
Average Position of motif in Background53.0 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGGGAAATTTCCC
--GGAAATTCCC-
 C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGGGAAATTTCCC
NGGGGATTTCCC-
 C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGGGAAATTTCCC
--GGAAATTCCC-
 C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGGGAAATTTCCC
GAAAGTGAAAGT----
 A C G T A C G T A C G T C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGGAAATTTCCC
--GGAAATCCCC-
 C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGGAAATTTCCC
--GGAAANCCCC-
 C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGGGAAATTTCCC
AATGGAAAAT----
 A C G T C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGGGAAATTTCCC
NNTGGAAANN----
 A C G T C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGGAAATTTCCC
AGGGGAATCCCCT
 C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGGAAATTTCCC
AAGGATATNTN--
 C G T A C T A G A C T G A C T G C G T A C G T A C G T A C A G T A G C T A G C T T A G C G T A C G A T C
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T