Information for 4-CATAAATCCAAAT (Motif 6)

A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
Reverse Opposite:
C G T A C A G T G C A T A C G T A C T G T A C G C G T A A C G T C G A T A C G T C G T A C G A T C T A G
p-value:1e-13
log p-value:-3.054e+01
Information Content per bp:1.785
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif15.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets55.8 +/- 20.0bp
Average Position of motif in Background50.7 +/- 39.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CATAAATCCAAAT
---ATATGCAAAT
 A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CATAAATCCAAAT---
---ATATGCAAATNNN
 A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCCAAAT
GGCCATAAATCA----
 A C G T A C G T A C G T A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCCAAAT
NGYCATAAAWCH----
 A C G T A C G T A C G T A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATAAATCCAAAT
GCCATAAATCA----
 A C G T A C G T A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CATAAATCCAAAT
---TTATGCAAAT
 A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCCAAAT
GGCCATAAATCA----
 A C G T A C G T A C G T A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCCAAAT
GGCCATAAATCAC---
 A C G T A C G T A C G T A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CATAAATCCAAAT---
----WATGCAAATGAG
 A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CATAAATCCAAAT
ACGGCCATAAAATTAAT-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G A C T G T C A C G T A C G T A C G A T A T G C A G T C C G T A C G T A G C T A C G A T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T A C G T