Information for 3-AAGCATTGRYTTCTCA (Motif 5)

G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
Reverse Opposite:
C G A T A T C G C G T A A T C G C T G A C G T A C T A G G A C T A G T C C G T A G T C A C G A T A T C G A G T C A G C T A C G T
p-value:1e-13
log p-value:-3.109e+01
Information Content per bp:1.725
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.9 +/- 22.3bp
Average Position of motif in Background42.5 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAGCATTGRYTTCTCA
-AGAAATGACTTCCCT
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AAGCATTGRYTTCTCA
-----TTGACTTTT--
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAGCATTGRYTTCTCA
--CCATTGTTTT----
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGCATTGRYTTCTCA-
--CCATTGTATGCAAAT
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A A C G T
A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAGCATTGRYTTCTCA--
-TNNNATGATTTCNNCNN
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A A C G T A C G T
A C G T A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAGCATTGRYTTCTCA
-TGCTGTGATTT----
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AAGCATTGRYTTCTCA
----ATTGATTYND--
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AAGCATTGRYTTCTCA
--GCAGTGATTT----
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAGCATTGRYTTCTCA
--ACTTTCGTTTCT--
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAGCATTGRYTTCTCA
--CCTTTGTTTT----
 G T C A C T G A T A C G A T G C G C T A A C G T A C G T A C T G C T G A G A T C A C G T A G C T A T G C G A C T A T G C C G T A
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T