Information for 9-CCGGCTGAAG (Motif 39)

A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T C G A T A G T C C G T A A C T G A G T C A G T C A C T G A C T G
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 17.5bp
Average Position of motif in Background35.0 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF/MA0686.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGGCTGAAG
ACCCGGATGTA-
 A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCGGCTGAAG
NAHCAGCTGD--
 A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCGGCTGAAG
CCCCCTGCTGTG-
 A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCGGCTGAAG
--NGCTN---
 A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGGCTGAAG
CCTGCTGAGH
 A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCGGCTGAAG
CCAGCTGTTN
 A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

PB0077.1_Spdef_1/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CCGGCTGAAG
AANNATCCGGATGTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCGGCTGAAG
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGGCTGAAG
ANCAGCTG---
 A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCTGAAG
CAGCAGCTGN--
 A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A C G T A A C T G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T