Information for 2-TCTGGCTTTG (Motif 3)

A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G
Reverse Opposite:
G T A C C G T A T C G A C G T A T C A G T G A C A G T C G T C A C T A G T G C A
p-value:1e-11
log p-value:-2.581e+01
Information Content per bp:1.725
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.66%
Number of Background Sequences with motif405.3
Percentage of Background Sequences with motif0.84%
Average Position of motif in Targets47.5 +/- 26.1bp
Average Position of motif in Background50.9 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TCTGGCTTTG
GGTCTGGCAT--
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------TCTGGCTTTG
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCTGGCTTTG-----
GCTGACCTTGAACTN
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCTGGCTTTG--
--TGACCTTGAN
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G A C G T A C G T
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCTGGCTTTG
BNTGDCCTTG
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCTGGCTTTG--
--TGACCTTGAV
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G A C G T A C G T
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCTGGCTTTG
NTTGGCANN-
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCTGGCTTTG
-TTGGCA---
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TCTGGCTTTG----
----CCWTTGTYYB
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TCTGGCTTTG-
-----CTTTGT
 A C G T A G T C A C G T A C T G A C T G A G T C C G A T A G C T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T