Information for 1-CTGCATTGAG (Motif 2)

A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G
Reverse Opposite:
T G A C G A C T A T G C G T C A C G T A G C A T C T A G A G T C C T G A A C T G
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.832
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif118.4
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets53.3 +/- 25.8bp
Average Position of motif in Background46.7 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CTGCATTGAG
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CTGCATTGAG----
----ATTGATTYND
 A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGCATTGAG---
NNCATTCATTCATNNN
 A C G T A C G T A C G T A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGCATTGAG
-CTCATTGTC
 A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

PB0005.1_Bbx_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTGCATTGAG---
NANTTCATTGAATTA
 A C G T A C G T A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGCATTGAG----
NNNCCATTGTGTNAN
 A C G T A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

ZNF143/MA0088.2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTGCATTGAG----
CAATGCATTGTGGGTA
 A C G T A C G T A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTGCATTGAG--
--CCWTTGTYYB
 A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTGCATTGAG---
GGACTGAATTCATGCC
 A C G T A C G T A C G T A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGCATTGAG--
--CCTTTGATGT
 A G T C G A C T C T A G A G T C C G T A A C G T A C G T A T C G C T G A A C T G A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T