Information for 6-AGGATTGAGT (Motif 21)

C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T
Reverse Opposite:
G T C A A G T C G C A T A G T C C G T A T C G A C A G T A G T C G T A C C G A T
p-value:1e-5
log p-value:-1.180e+01
Information Content per bp:1.812
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.18%
Number of Background Sequences with motif1202.2
Percentage of Background Sequences with motif2.52%
Average Position of motif in Targets47.4 +/- 27.3bp
Average Position of motif in Background51.0 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGGATTGAGT----
---CTTGAGTGGCT
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

TBX15/MA0803.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGATTGAGT
AGGTGTGA--
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGATTGAGT
AGGTGTGA--
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGATTGAGT----
----TTGAGTGSTT
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGGATTGAGT----
----TTRAGTGSYK
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGGATTGAGT---
---CTYRAGTGSY
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGATTGAGT
VRGGATTARN-
 A C G T C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

MGA/MA0801.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGATTGAGT
AGGTGTGA--
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGGATTGAGT---
---BTBRAGTGSN
 C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----AGGATTGAGT--
NNNNGTTGATTGGGTCG
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G G T C A A G C T C G A T A C T G C G T A A C T G A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G