Information for 24-GRGTATTATCATC (Motif 38)

A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
Reverse Opposite:
A T C G C G T A C G A T C T A G G T C A A C G T G T C A G T C A C G A T G T C A A G T C G A C T G T A C
p-value:1e-3
log p-value:-7.480e+00
Information Content per bp:1.765
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif37.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets50.8 +/- 25.6bp
Average Position of motif in Background48.5 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GRGTATTATCATC-
AGGGGGATTAGCTGCC
 A C G T A C G T A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GRGTATTATCATC
CGTTGGGGATTAGCCT-
 A C G T A C G T A C G T A C G T A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GRGTATTATCATC
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T A C G T A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GRGTATTATCATC---
NCGTATTATAATCNTA
 A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PH0123.1_Obox3/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GRGTATTATCATC
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GRGTATTATCATC
NNGGATTAGN---
 A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GRGTATTATCATC
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GRGTATTATCATC
GNGGATTAGN---
 A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GRGTATTATCATC
NGGGATTA-----
 A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GRGTATTATCATC
VRGGATTARN---
 A C T G C T G A A C T G C A G T G C T A A C G T C A G T C G T A A C G T A G T C G C T A G C A T A T G C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T