Information for 21-CTGTTGTGAAAAT (Motif 34)

A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
Reverse Opposite:
C G T A A G C T A C G T C G A T A C G T A G T C C G T A A G T C C G T A C G T A A G T C G T C A A C T G
p-value:1e-4
log p-value:-9.923e+00
Information Content per bp:1.943
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.0 +/- 7.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTGTTGTGAAAAT-
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGTTGTGAAAAT
GTNTTGTTGTGANNT-
 A C G T A C G T A C G T A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGTTGTGAAAAT
-NATTGTGCAAT-
 A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGTTGTGAAAAT
-AGGTGTGAAA--
 A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTGTTGTGAAAAT
CATTGTTATGCAAAT
 A C G T A C G T A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

EOMES/MA0800.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGTTGTGAAAAT
AAGGTGTGAAAAT
 A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGTTGTGAAAAT
---TTATGCAAAT
 A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTGTTGTGAAAAT--
---TTATGCAAATTA
 A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTGTTGTGAAAAT--
---TTATGCAAATTA
 A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTGTTGTGAAAAT
----TATGCAAAT
 A G T C A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T