Information for 4-TGCATAGGTA (Motif 20)

A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A
Reverse Opposite:
A C G T C G T A A G T C A G T C A G C T C G T A C G A T A T C G A G T C C G T A
p-value:1e-8
log p-value:-1.943e+01
Information Content per bp:1.833
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif51.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets71.8 +/- 25.7bp
Average Position of motif in Background50.8 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0167.1_Sox13_2/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGCATAGGTA---
GTATTGGGTGGGTAATT
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TGCATAGGTA-
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU4F2/MA0683.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCATAGGTA-----
ATGCATAATTAATGAG
 A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCATAGGTA
ATGMATATDC-
 A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGCATAGGTA--
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TGCATAGGTA-
NNNNGTTGATTGGGTCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGCATAGGTA---
YATGCATATRCATRT
 A C G T A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGCATAGGTA--
--CSTGGGAAAD
 A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T A C G T
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

POU4F1/MA0790.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCATAGGTA---
ATGAATAATTAATG
 A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TGCATAGGTA-
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A C G T C T G A C T A G A C T G C G A T C G T A A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C