Information for 8-AGBTCACCAVCCTTCC (Motif 12)

C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
Reverse Opposite:
C T A G C A T G C G T A C G T A A C T G C T A G A C T G A G C T A C T G A C T G A G C T C T A G C G T A T A G C A G T C A C G T
p-value:1e-9
log p-value:-2.239e+01
Information Content per bp:1.764
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.9 +/- 28.6bp
Average Position of motif in Background54.1 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGBTCACCAVCCTTCC
AAGGTCAC---------
 A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGBTCACCAVCCTTCC
TCTCAAAGGTCACCTG------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGBTCACCAVCCTTCC
TCAAGGTCAN---------
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGBTCACCAVCCTTCC
TRAGGTCA----------
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGBTCACCAVCCTTCC
ATCAAGGTCA----------
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGBTCACCAVCCTTCC
AGGTCA----------
 C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------AGBTCACCAVCCTTCC
TCTCAAAGGTCACGAG------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGBTCACCAVCCTTCC
NAGGTCANTGACCT---
 A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGBTCACCAVCCTTCC
CAAAGGTCAAGGG------
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGBTCACCAVCCTTCC
TCAAGGTCAT---------
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C T G A A G T C G T A C C T G A T A G C A G T C G T A C A C G T A C G T G T A C A G T C
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T