Information for 1-TAAATGGCTG (Motif 11)

A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G
Reverse Opposite:
A G T C C G T A A C T G A G T C A G T C C G T A G C A T A G C T A C G T T C G A
p-value:1e-10
log p-value:-2.321e+01
Information Content per bp:1.848
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.69%
Number of Background Sequences with motif104.6
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets49.9 +/- 22.4bp
Average Position of motif in Background48.3 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TAAATGGCTG-
CAAGATGGCGGC
 A C G T A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PH0005.1_Barhl1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TAAATGGCTG--
GNNTTAATTGGTTGTT
 A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TAAATGGCTG--
-TAATGGCGGNC
 A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TAAATGGCTG--
TGATTGGCTANN
 A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TAAATGGCTG-
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TAAATGGCTG
GTTAATGGCC-
 A C G T A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TAAATGGCTG--
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TAAATGGCTG-
---TWGTCTGV
 A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

BARHL2/MA0635.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TAAATGGCTG
GCTAAACGGT--
 A C G T A C G T A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TAAATGGCTG
GCTAATTGCT--
 A C G T A C G T A G C T C G T A T C G A C G T A C G A T A C T G A C T G G T A C A C G T C T A G
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T