Information for 4-GCGCAGGGGCTGCTGC (Motif 9)

A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C T G A G T C
p-value:1e-18
log p-value:-4.201e+01
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.6 +/- 15.3bp
Average Position of motif in Background41.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF1/MA0506.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCGCAGGGGCTGCTGC
TGCGCAGGCGC------
 A C G T A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCGCAGGGGCTGCTGC---
----AGATGCTRCTRCCHT
 A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCGCAGGGGCTGCTGC
GCGCATGCGCAG----
 A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCGCAGGGGCTGCTGC----
---NNNNAGCAGCTGCTGAN
 A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

NRF(NRF)/Promoter/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCGCAGGGGCTGCTGC
GTGCGCATGCGC------
 A C G T A C G T A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C
A T C G A G C T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCGCAGGGGCTGCTGC
SDGCAGGTGCNS----
 A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GCGCAGGGGCTGCTGC-
----NGNGACAGCTGCN
 A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCGCAGGGGCTGCTGC-
-----NNAGCAGCTGCT
 A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GCGCAGGGGCTGCTGC-
-------CGCAGCTGCG
 A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCGCAGGGGCTGCTGC-
NNNGGGHAGCAHRTGCTRCC
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C