Information for 11-GCAACCAAYC (Motif 25)

A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C
Reverse Opposite:
A C T G T C G A A C G T A C G T A T C G T C A G A C G T C G A T A C T G A T G C
p-value:1e-12
log p-value:-2.852e+01
Information Content per bp:1.732
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.30%
Number of Background Sequences with motif284.6
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets49.8 +/- 25.6bp
Average Position of motif in Background50.3 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCAACCAAYC--
AAATGGACCAATCAG
 A C G T A C G T A C G T A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCAACCAAYC-
ACTAGCCAATCA
 A C G T A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCAACCAAYC
CCAATCAA--
 A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAACCAAYC---
-CCATCAATCAAA
 A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T A C G T A C G T
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCAACCAAYC--
--AGCCAATCGG
 A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCAACCAAYC--------
TGGACCAATCAGCACTCT
 A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCAACCAAYC-
GCCATAAATCA
 A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PH0026.1_Duxbl/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAACCAAYC---
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A C G T A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAACCAAYC-
GGCCATAAATCA
 A C G T A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAACCAAYC-----
SCAGYCADGCATGAC
 A T C G T G A C G C T A T G C A A G T C A T G C C G T A T G C A A G C T A G T C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C