Information for 5-SARGCAMAGGMCA (Motif 5)

A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A
Reverse Opposite:
C G A T A C T G A C T G A G T C A G T C A C G T A C G T A C G T A C T G A G T C A G T C A C G T A T G C
p-value:1e-12
log p-value:-2.874e+01
Information Content per bp:1.873
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.1 +/- 32.4bp
Average Position of motif in Background61.9 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.73
Offset:4
Orientation:forward strand
Alignment:SARGCAMAGGMCA-
----CAAAGGTCAG
 A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-SARGCAMAGGMCA
TAGGGCAAAGGTCA
 A C G T A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-SARGCAMAGGMCA
TGGGGCAAAGGTCA
 A C G T A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:SARGCAMAGGMCA
-ANGNAAAGGTCA
 A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--SARGCAMAGGMCA
GTAGGGCAAAGGTCA
 A C G T A C G T A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--SARGCAMAGGMCA
AGAGTCCAAAGTCCA
 A C G T A C G T A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:SARGCAMAGGMCA----
-TCTCAAAGGTCACGAG
 A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:SARGCAMAGGMCA----
-TCTCAAAGGTCACCTG
 A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---SARGCAMAGGMCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.62
Offset:6
Orientation:forward strand
Alignment:SARGCAMAGGMCA-
------AAGGTCAC
 A T C G C G T A C T A G A C T G G T A C C G T A G T C A C G T A A C T G A C T G G T A C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C