Information for 8-GCAGAGAGGC (Motif 25)

T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C
Reverse Opposite:
A C T G A G T C A T G C A C G T A T G C C G A T A G T C A C G T C T A G A G T C
p-value:1e-8
log p-value:-1.900e+01
Information Content per bp:1.822
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif471.7
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets57.7 +/- 29.1bp
Average Position of motif in Background50.4 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAGGC
CCAGACRSVB
 T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAGGC-
CTTGAGTGGCT
 T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAGGC-----
SCAGYCADGCATGAC
 T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAGGC
CCAGACAG--
 T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCAGAGAGGC-
-TTGAGTGSTT
 T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GCAGAGAGGC-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAGAGAGGC----
GGAGAAAGGTGCGA
 T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAGAGAGGC
BTBRAGTGSN
 T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCAGAGAGGC--
NNNACCGAGAGTNNN
 A C G T A C G T A C G T T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGAGGC-----
TGCGGAGTGGGACTGG
 A C G T T C A G G A T C G T C A A C T G C G T A A T C G T G C A T A C G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G