Information for 5-KCCGSRGAGGTCY (Motif 4)

A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C
Reverse Opposite:
C T A G A T C G C G T A A G T C A G T C A C G T A G T C A G C T A T G C A T G C A C T G A C T G G T C A
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.9 +/- 29.5bp
Average Position of motif in Background14.8 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:KCCGSRGAGGTCY
-----AGRGGTCA
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KCCGSRGAGGTCY
-CGTGGGTGGTCC
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C
A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KCCGSRGAGGTCY----
NNANTGGTGGTCTTNNN
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:KCCGSRGAGGTCY----
----CAAAGGTCAAGGG
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:KCCGSRGAGGTCY
-------AGGTCA
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:KCCGSRGAGGTCY
-----TRAGGTCA
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:KCCGSRGAGGTCY----
-TCTCAAAGGTCACGAG
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:KCCGSRGAGGTCY-----
-GGCGAGGGGTCAAGGGC
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:KCCGSRGAGGTCY----
-TCTCAAAGGTCACCTG
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0025.1_Glis2_1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:KCCGSRGAGGTCY---
NTNTGGGGGGTCNNNA
 A C G T A G T C A G T C A T C G A T C G C T G A A C T G G T C A A C T G A C T G A C G T A T G C A G T C A C G T A C G T A C G T
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A