Information for 5-CBTCCCKGCKGGA (Motif 5)

A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A
Reverse Opposite:
G C A T A T G C A T G C T G C A C T A G A T G C T G A C C T A G T C A G T A C G T G C A T C G A T C A G
p-value:1e-14
log p-value:-3.307e+01
Information Content per bp:1.555
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.6 +/- 30.9bp
Average Position of motif in Background51.0 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CBTCCCKGCKGGA
-CCCCCTGCTGTG
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CBTCCCKGCKGGA-
----CWGGCGGGAA
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T
A C G T A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CBTCCCKGCKGGA--
---BTKGGCGGGAAA
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T A C G T
A C G T A C G T A C G T A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A

E2F4/MA0470.1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CBTCCCKGCKGGA---
-----GGGCGGGAAGG
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CBTCCCKGCKGGA---
------GGCGGGAARN
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CBTCCCKGCKGGA-
GGCCYCCTGCTGDGH
 A C G T A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CBTCCCKGCKGGA-
----CCTGCTGAGH
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CBTCCCKGCKGGA---
-TCNCCTGCTGNGNNN
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CBTCCCKGCKGGA---
------GGCGGGAAAH
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CBTCCCKGCKGGA--
NTCCCCTCAGGGANT
 A G T C A G C T A C G T A T G C A G T C A G T C A C T G T A C G G A T C A C G T A T C G T A C G C G T A A C G T A C G T
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T