Information for 12-TCACCAATCA (Motif 24)

A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T A C T G A C T G A C G T A C T G T C G A
p-value:1e-7
log p-value:-1.814e+01
Information Content per bp:1.833
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif29.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets52.1 +/- 23.3bp
Average Position of motif in Background53.8 +/- 36.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----TCACCAATCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TCACCAATCA-------
TGGACCAATCAGCACTCT
 A C G T A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--TCACCAATCA
ACTAGCCAATCA
 A C G T A C G T A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.80
Offset:3
Orientation:forward strand
Alignment:TCACCAATCA-
---CCAATCAA
 A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TCACCAATCA--
CCATCAATCAAA
 A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TCACCAATCA-
-AGCCAATCGG
 A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TCACCAATCA
TCATCAATCA
 A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TCACCAATCA-
GYCATCMATCAT
 A C G T A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TCACCAATCA----
AACAACCAATTAATTC
 A C G T A C G T A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TCACCAATCA----
GAAGATCAATCACTTA
 A C G T A C G T A G C T T G A C C G T A A G T C A G T C C G T A G T C A C G A T G T A C C G T A A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A