Information for 21-RGRARAMAAATAAARM (Motif 29)

C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
Reverse Opposite:
A C T G A G T C A C G T A C G T C G A T C G T A A C G T A G C T A C G T A C G T A C G T A G T C A C G T A G T C A G T C A G T C
p-value:1e-9
log p-value:-2.224e+01
Information Content per bp:1.852
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.4 +/- 22.7bp
Average Position of motif in Background23.6 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.64
Offset:6
Orientation:forward strand
Alignment:RGRARAMAAATAAARM
------CCAATAAAAA
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RGRARAMAAATAAARM---
---AACCCAATAAAATTCG
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RGRARAMAAATAAARM--
-GTTAAAAAAAAAAATTA
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C A C G T A C G T
A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.62
Offset:6
Orientation:forward strand
Alignment:RGRARAMAAATAAARM
------CCAATAAAAC
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.61
Offset:6
Orientation:forward strand
Alignment:RGRARAMAAATAAARM
------CCAATAAAAA
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RGRARAMAAATAAARM---
---CTACCAATAAAATTCT
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Foxd3/MA0041.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:RGRARAMAAATAAARM
---AAACAAACATTC-
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RGRARAMAAATAAARM
ATGCTAAAAATAGAA-
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:RGRARAMAAATAAARM
-----NCYAATAAAA-
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RGRARAMAAATAAARM
----AAGCCATAAAA-
 C T A G A C T G C T A G C G T A C T A G C G T A G T C A C G T A C T G A C G T A A C G T C G T A C G T A C G T A C T A G G T A C
A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T