Information for 16-SMCWAGKAAAGSTSWS (Motif 24)

A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
Reverse Opposite:
A T C G G C A T A T G C C G T A A T C G A G T C A C G T A C G T A C G T G T C A A G T C A C G T C G A T C T A G A C T G A T G C
p-value:1e-10
log p-value:-2.329e+01
Information Content per bp:1.792
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.2 +/- 21.5bp
Average Position of motif in Background71.7 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:SMCWAGKAAAGSTSWS
---ANGNAAAGGTCA-
 A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
A C G T A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:SMCWAGKAAAGSTSWS---
---TCTCAAAGGTCACCTG
 A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:SMCWAGKAAAGSTSWS---
---TCTCAAAGGTCACGAG
 A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

RARA(var.2)/MA0730.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--SMCWAGKAAAGSTSWS
AGGTCATGCAAAGGTCA-
 A C G T A C G T A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--SMCWAGKAAAGSTSWS
AGGTCAACTAAAGGTCA-
 A C G T A C G T A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:SMCWAGKAAAGSTSWS
------TCAAGGTCAN
 A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:SMCWAGKAAAGSTSWS
GNCTATAAAAGG----
 A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---SMCWAGKAAAGSTSWS
GAAAACTAGTTAACATC--
 A C G T A C G T A C G T A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.53
Offset:8
Orientation:forward strand
Alignment:SMCWAGKAAAGSTSWS
--------AAGGTCAC
 A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:SMCWAGKAAAGSTSWS
-ACTAGTTAAC-----
 A T C G G T A C A G T C C G T A C G T A C T A G A C G T C G T A G T C A C G T A A C T G A T G C C G A T A T C G C G T A A T G C
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T A C G T A C G T