Information for 5-CASAGGCCSTTGA (Motif 9)

A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A
Reverse Opposite:
A G C T A T G C C G T A C G T A A T G C A C T G A T C G A G T C A T G C G A C T A T G C A C G T A C T G
p-value:1e-12
log p-value:-2.827e+01
Information Content per bp:1.795
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif54.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets49.1 +/- 24.5bp
Average Position of motif in Background53.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CASAGGCCSTTGA
----GGCVGTTR-
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A
A C G T A C G T A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CASAGGCCSTTGA
---TGGCAGTTGG
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A
A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CASAGGCCSTTGA---
NNNTGGCAGTTGGTNN
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CASAGGCCSTTGA-
----TGACCTTGAN
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

PB0150.1_Mybl1_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CASAGGCCSTTGA---
-CACGGCAGTTGGTNN
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A A C G T A C G T A C G T
A C G T T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CASAGGCCSTTGA
---TGGCAGTTGN
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A
A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CASAGGCCSTTGA---
NNNNATGACCTTGANTN
 A C G T A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CASAGGCCSTTGA-
----TGACCTTGAV
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CASAGGCCSTTGA
---BRRCVGTTDN
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A
A C G T A C G T A C G T A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CASAGGCCSTTGA----
--GCTGACCTTGAACTN
 A G T C C G T A A T C G C T G A A T C G A C T G A T G C G T A C T A C G A C G T A C G T A T C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T