Information for 3-GGAGVTTAGC (Motif 5)

A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C
Reverse Opposite:
T C A G A G T C A G C T C G T A C T G A A T C G G A T C A C G T T G A C G T A C
p-value:1e-15
log p-value:-3.519e+01
Information Content per bp:1.637
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif9.88%
Number of Background Sequences with motif1663.9
Percentage of Background Sequences with motif3.43%
Average Position of motif in Targets50.8 +/- 25.7bp
Average Position of motif in Background50.0 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGAGVTTAGC
AAGAGGATTAG-
 A C G T A C G T A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

Gata4/MA0482.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGAGVTTAGC
NNGAGATAAGA
 A C G T A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGAGVTTAGC-
-CAGATAAGGN
 A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C A C G T
A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGAGVTTAGC
--GGATTAGC
 A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGAGVTTAGC-
-NAGATAAGNN
 A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C A C G T
A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

Gata1/MA0035.3/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGAGVTTAGC-
ANAGATAAGAA
 A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C A C G T
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGAGVTTAGC
NVAGATAAGR
 A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C
T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A

PH0139.1_Pitx3/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGAGVTTAGC----
AGGGGGATTAGCTGCC
 A C G T A C G T A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

GATA3/MA0037.2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGAGVTTAGC
--AGATAAGA
 A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGAGVTTAGC--
-CAGGTAAGTAT
 A C T G A C T G G T C A C T A G T A G C G A C T G C A T C T G A A C T G A G T C A C G T A C G T
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T