Information for 9-CTGGCAGCCTTTC (Motif 12)

A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A C G T A A C T G A C T G A G T C A C G T C A T G A G T C A G T C C G T A A C T G
p-value:1e-9
log p-value:-2.136e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 22.4bp
Average Position of motif in Background67.7 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGGCAGCCTTTC-
CTGGCAGNCTGCCA
 A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PB0154.1_Osr1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCAGCCTTTC
NNNTTAGGTAGCNTNT-
 A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCAGCCTTTC
NNTGTAGGTAGCANNT-
 A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCCTTTC
CTTGGCAA------
 A C G T A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTGGCAGCCTTTC
--NGAAGC-----
 A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CTGGCAGCCTTTC
----CAGCC----
 A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CTGGCAGCCTTTC
CAATCACTGGCAGAAT---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAGCCTTTC
GGTCTGGCAT------
 A C G T A C G T A C G T A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCCTTTC
VBTGWCAGCB----
 A C G T A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGCCTTTC
TNNGGGCAG------
 A C G T A C G T A G T C C G A T A C T G A C T G G A T C C G T A A C T G A G T C G T A C A C G T A C G T A C G T A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T