Information for 1-CAGCAGGGCAGAG (Motif 1)

T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
Reverse Opposite:
A G T C C G A T A G T C C A G T A C T G A G T C A G T C G A T C C G A T C T A G G T A C A C G T A C T G
p-value:1e-14
log p-value:-3.354e+01
Information Content per bp:1.762
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif69.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets62.1 +/- 17.4bp
Average Position of motif in Background50.5 +/- 39.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGGCAGAG
CACAGCAGGGGG---
 A C G T A C G T T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGGCAGAG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGGCAGAG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGCAGGGCAGAG----
---TAGGGCAAAGGTCA
 T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAGCAGGGCAGAG----
--GTAGGGCAAAGGTCA
 T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGCAGAG
DCTCAGCAGG------
 A C G T A C G T A C G T T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGGCAGAG
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A C G T A C G T T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGCAGAG
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGCAGGGCAGAG--
-----TGGAACAGMA
 T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAGCAGGGCAGAG
--TNNGGGCAG--
 T G A C C G T A A C T G G A T C C G T A C T A G C T A G C T A G G T A C G C T A T A C G C G T A A C T G
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T