Information for 12-TAACAGACAC (Motif 13)

C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
Reverse Opposite:
A C T G C G A T A T C G A C G T A G T C A C G T C T A G A G C T A G C T C G T A
p-value:1e-10
log p-value:-2.399e+01
Information Content per bp:1.848
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif15.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets47.3 +/- 19.1bp
Average Position of motif in Background61.5 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TAACAGACAC---
AGCAACAGCCGCACC
 A C G T A C G T C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C A C G T A C G T A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TAACAGACAC--
--CCAGACRSVB
 C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TAACAGACAC
AAAAATAACAAACGG
 A C G T A C G T A C G T A C G T A C G T C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TAACAGACAC
--CCAGACAG
 C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TAACAGACAC
AGGTGHCAGACA-
 A C G T A C G T A C G T C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TAACAGACAC
--BCAGACWA
 C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TAACAGACAC----
CAAATCCAGACATCACA
 A C G T A C G T A C G T C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TAACAGACAC
AGGTGNCAGACAG
 A C G T A C G T A C G T C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TAACAGACAC
-AACCGANA-
 C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
A C G T C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A A C G T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TAACAGACAC
NHAACBGYYV-
 A C G T C G A T T C G A C T G A A G T C C G T A T C A G C G T A A T G C G C T A A G T C
A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A A C G T