Information for 4-CTCCGCGGCTGCG (Motif 5)

A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C C G T A A C T G G T A C A G T C A C T G G T A C C T A G C T A G C T G A A T C G
p-value:1e-11
log p-value:-2.714e+01
Information Content per bp:1.875
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.6 +/- 11.4bp
Average Position of motif in Background57.7 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTCCGCGGCTGCG
---CGCAGCTGCG
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

NRF1/MA0506.1/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CTCCGCGGCTGCG--
----GCGCCTGCGCA
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCCGCGGCTGCG-
--CTGCGCATGCGC
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G A C G T
A C G T A C G T A T G C A G C T T C A G T G A C T C A G A T G C T G C A A C G T A T C G G A T C A C T G A G T C

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCCGCGGCTGCG----
CTCAGCAGCTGCTACTG
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

NRF(NRF)/Promoter/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTCCGCGGCTGCG-
--GTGCGCATGCGC
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G A C G T
A C G T A C G T A T C G A G C T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTCCGCGGCTGCG
--VBSYGTCTGG-
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTCCGCGGCTGCG
----TWGTCTGV-
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CTCCGCGGCTGCG
-------GCTGTG
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

HINFP/MA0131.2/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTCCGCGGCTGCG-
--CAACGTCCGCGG
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G A C G T
A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTCCGCGGCTGCG
--CAGCAGCTGN-
 A T G C A G C T A G T C A G T C A C T G G T A C A C T G A C T G A G T C A C G T A C T G A G T C A C T G
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T