Information for 6-GACAGDCACCCAT (Motif 10)

A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
Reverse Opposite:
C G T A A C G T A C T G A C T G A C T G A C G T A C T G G A C T A T G C C G A T C T A G A C G T A G T C
p-value:1e-13
log p-value:-3.206e+01
Information Content per bp:1.867
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.8 +/- 27.4bp
Average Position of motif in Background65.3 +/- 7.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GACAGDCACCCAT
BTGABTGACAGS---
 A C G T A C G T A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GACAGDCACCCAT
GSCTGTCACTCA-
 A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GACAGDCACCCAT
NTGATTGACAGN---
 A C G T A C G T A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACAGDCACCCAT--
ATAAATGACACCTATCA
 A C G T A C G T A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GACAGDCACCCAT
TGTCTGDCACCT--
 A C G T A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GACAGDCACCCAT
CTGTCTGTCACCT--
 A C G T A C G T A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACAGDCACCCAT
CTGGCAGNCTGCCA-
 A C G T A C G T A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GACAGDCACCCAT
VGCTGWCAVB---
 A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GACAGDCACCCAT---
-SCAGYCADGCATGAC
 A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GACAGDCACCCAT
---TGACACCT--
 A C T G C G T A A G T C C G T A A T C G C G T A A G T C C G T A G T A C A G T C A G T C C G T A C G A T
A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T