Information for 8-AGAGTCCTGGCTG (Motif 9)

C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A G T C G T A C C G T A C T A G C T A G G T C A A T G C C A G T A T G C A G C T
p-value:1e-13
log p-value:-3.183e+01
Information Content per bp:1.837
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.5 +/- 27.7bp
Average Position of motif in Background31.0 +/- 1.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:AGAGTCCTGGCTG
--------NGCTN
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AGAGTCCTGGCTG-
------TWGTCTGV
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.56
Offset:9
Orientation:forward strand
Alignment:AGAGTCCTGGCTG--
---------GCTGTG
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AGAGTCCTGGCTG
------TTGGCA-
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AGAGTCCTGGCTG-
-----NTTGGCANN
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGAGTCCTGGCTG-
GTCATGCHTGRCTGS
 A C G T C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGAGTCCTGGCTG--
---CCCCCTGCTGTG
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGAGTCCTGGCTG-
------CTGTCTGG
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGAGTCCTGGCTG---
------CCTGCTGAGH
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGAGTCCTGGCTG---
-GGCCYCCTGCTGDGH
 C T G A A T C G G T C A A T C G A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C