Information for 23-CCCTAAAGATCGG (Motif 39)

A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
Reverse Opposite:
A G T C G A T C A T C G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C T G A C T G A T C G
p-value:1e-7
log p-value:-1.840e+01
Information Content per bp:1.775
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets38.7 +/- 14.6bp
Average Position of motif in Background24.3 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAGATCGG
NGYCATAAAWCH---
 A C G T A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCCTAAAGATCGG
AAGCCATAAAA-----
 A C G T A C G T A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCCTAAAGATCGG--
----ANAGATAAGAA
 A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCCTAAAGATCGG
CCAATAAAAA----
 A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCCTAAAGATCGG
AGAGCCATAAAATTCG-
 A C G T A C G T A C G T A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCCTAAAGATCGG
GCAATAAAA-----
 A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAAAGATCGG
NSCACTYVAV-----
 A C G T A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CCCTAAAGATCGG
CCAATAAAAC----
 A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T

FOXG1/MA0613.1/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CCCTAAAGATCGG
--GTAAACAA---
 A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G
A C G T A C G T C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A A C G T A C G T A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CCCTAAAGATCGG--------
TTTTTAGAGATAAGAAATAAAG
 A C G T A T G C G T A C G T A C A C G T G T C A T G C A C G T A C T A G G T C A C G A T A T G C C A T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G