Information for 4-TTAGCTAGTT (Motif 9)

A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T
Reverse Opposite:
C G T A C G T A A G T C C G A T C G T A C T A G A G T C A C G T G T C A G T C A
p-value:1e-7
log p-value:-1.622e+01
Information Content per bp:1.876
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif3.11%
Number of Background Sequences with motif32.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets45.4 +/- 22.0bp
Average Position of motif in Background50.1 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTAGCTAGTT---
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTAGCTAGTT
GTTAACTAGN-
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TTAGCTAGTT--
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0028.1_En1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTAGCTAGTT---
GNATTAATTAGTTNNC
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T A C G T
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PH0045.1_Hoxa1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTAGCTAGTT-----
CTGAGCTAATTACCGT
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0108.1_Msx3/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTAGCTAGTT---
NNNTTAATTGGTTTTN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTAGCTAGTT---
TTGACCTANTTATN
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTAGCTAGTT
TGACCTARTT
 A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

PH0049.1_Hoxa2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTAGCTAGTT-----
NTGAGCTAATTACCNT
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T A C G T A C G T A C G T
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T

PH0036.1_Gsx2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTAGCTAGTT-----
NTNNGCTAATTANCNT
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A C T G A C G T C G A T A C G T A C G T A C G T A C G T A C G T
G T C A G A C T T A G C T C G A C T A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C G A G A T C A T G C A G C T