Information for 3-CTATATGCTTTAT (Motif 4)

G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A C G A T C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G
p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.941
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets77.2 +/- 10.3bp
Average Position of motif in Background43.7 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTATATGCTTTAT
AAGATATCCTT---
 A C G T G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTATATGCTTTAT
NAACATATGTTT---
 A C G T A C G T G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CTATATGCTTTAT---
-----TGATTTATGGC
 G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTATATGCTTTAT----
----NTGATTTATGGCC
 G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

BHLHE22/MA0818.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTATATGCTTTAT
ACCATATGTT----
 A C G T G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T
T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CTATATGCTTTAT----
-----TGATTTATGGCC
 G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CTATATGCTTTAT----
-----DGWTTTATGRCN
 G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CTATATGCTTTAT----
-----TGATTTATGGCC
 G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTATATGCTTTAT----
--WYATGCATWATGCAT
 G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

OLIG3/MA0827.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTATATGCTTTAT
ACCATATGTT----
 A C G T G T A C A C G T C G T A A C G T C G T A A C G T A C T G G T A C A C G T A C G T A C G T C G T A A C G T
T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T A C G T A C G T A C G T A C G T