Information for 2-TTTCAAACCTTGTGGT (Motif 2)

A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
Reverse Opposite:
G C T A G T A C T A G C G T C A G T A C G T C A C T G A C A T G C A T G C A G T C G A T A C G T T C A G C G T A C G T A C T G A
p-value:1e-9
log p-value:-2.290e+01
Information Content per bp:1.597
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif8.07%
Number of Background Sequences with motif332.9
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets54.0 +/- 26.7bp
Average Position of motif in Background48.4 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTTCAAACCTTGTGGT
TTTGAAACCG------
 A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTCAAACCTTGTGGT
NNTTTTCACACCTTNNN--
 A C G T A C G T A C G T A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTCAAACCTTGTGGT
TTTCACACCT------
 A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTCAAACCTTGTGGT
NTTTTCACACCTT-----
 A C G T A C G T A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T A C G T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTCAAACCTTGTGGT
TTTCACACCTN-----
 A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T A C G T A C G T A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTTCAAACCTTGTGGT
-TTCACACCTT-----
 A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTCAAACCTTGTGGT
CTTCACACCTA-----
 A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTTCAAACCTTGTGGT
ATTTGAATT--------
 A C G T A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TTTCAAACCTTGTGGT
--TCACACCT------
 A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TTTCAAACCTTGTGGT
KTTCACACCT------
 A G C T C G A T G A C T A G T C T C G A G C T A G T C A G T A C G T A C G A C T A C G T C A T G A C G T A C T G C A T G C G A T
C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T