Information for 6-CCAGAGGGCG (Motif 18)

A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G
Reverse Opposite:
A G T C A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A T C G
p-value:1e-7
log p-value:-1.765e+01
Information Content per bp:1.869
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif73.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets51.3 +/- 29.4bp
Average Position of motif in Background48.5 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CCAGAGGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCAGAGGGCG-
TCACCTCTGGGCAG
 A C G T A C G T A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGGGCG-----
NNNAAGGGGGCGGGNNN
 A C G T A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G A C G T A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGCG-
GCCTCAGGGCAT
 A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CCAGAGGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGGGCG
TGCCCNGGGGCA
 A C G T A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCAGAGGGCG-
SCCTSAGGSCAW
 A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G A C G T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGCG
AACAGATGGC-
 A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCAGAGGGCG-
TTGCCCTAGGGCAT
 A C G T A C G T A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G A C G T
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCAGAGGGCG
TGTCAGGGGGCG
 A C G T A C G T A T G C A G T C G T C A A C T G G T C A A C T G A C T G C T A G G T A C C T A G
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G