Information for 3-GGAGARAAACCCTATC (Motif 3)

A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
Reverse Opposite:
A T C G C T G A A G C T C T G A C T A G T A C G C T A G G C A T A C G T G A C T G A C T G A C T A G T C A G C T A G T C G T A C
p-value:1e-21
log p-value:-4.974e+01
Information Content per bp:1.668
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif5.51%
Number of Background Sequences with motif43.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets47.5 +/- 25.3bp
Average Position of motif in Background49.2 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GGAGARAAACCCTATC
--GGAAATCCCC----
 A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GGAGARAAACCCTATC
-GGGAAATCCCCN---
 A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T

Six3/MA0631.1/Jaspar

Match Rank:3
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GGAGARAAACCCTATC
ANANGTGATACCCTATN
 A C G T A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0163.1_Six3/Jaspar

Match Rank:4
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GGAGARAAACCCTATC
ANANGTGATACCCTATN
 A C G T A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

OLIG2/MA0678.1/Jaspar

Match Rank:5
Score:0.50
Offset:8
Orientation:forward strand
Alignment:GGAGARAAACCCTATC--
--------ACCATATGGT
 A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G A C T G A C C T G A A C G T T G C A G A C T C A T G A C T G G A C T

OLIG3/MA0827.1/Jaspar

Match Rank:6
Score:0.49
Offset:8
Orientation:forward strand
Alignment:GGAGARAAACCCTATC--
--------ACCATATGTT
 A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GGAGARAAACCCTATC
GGGGGAATCCCC----
 A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GGAGARAAACCCTATC
TGGGGA-----------
 A C G T A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-GGAGARAAACCCTATC
ANANNTGATACCCTATN
 A C G T A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

BHLHE22/MA0818.1/Jaspar

Match Rank:10
Score:0.48
Offset:8
Orientation:forward strand
Alignment:GGAGARAAACCCTATC--
--------ACCATATGTT
 A C T G C T A G C T G A C T A G C G T A C T G A C T G A C G T A C G T A A G T C A T G C G A T C A G C T C T G A G A C T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T