Information for 6-CTTCACCTCDGCA (Motif 11)

A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C G A T C A C T G C T G A A C T G A C T G A C G T A T C G G T C A C T G A A C T G
p-value:1e-8
log p-value:-1.877e+01
Information Content per bp:1.846
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif11.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.2 +/- 21.4bp
Average Position of motif in Background47.4 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTTCACCTCDGCA
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTTCACCTCDGCA-
NNANTTGACCCCTNNNN
 A C G T A C G T A C G T A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTTCACCTCDGCA-
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTTCACCTCDGCA-
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTTCACCTCDGCA
CNNTTGACCTTTG--
 A C G T A C G T A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTTCACCTCDGCA
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTTCACCTCDGCA
--TGACCYCT---
 A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTTCACCTCDGCA
--TGACCTYA---
 A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTTCACCTCDGCA-----
---CCACACAGCAGGAGA
 A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CTTCACCTCDGCA-----
------CACAGCAGGGGG
 A G T C A G C T A C G T A T G C G T C A G T A C A G T C A G C T A G T C C A T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G