Information for 6-CGCGAAGGCCGGA (Motif 8)

A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A T C G A C T G A G T C A G T C A C G T A C G T A T G C A C T G A T G C A T C G
p-value:1e-11
log p-value:-2.645e+01
Information Content per bp:1.881
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.0 +/- 29.5bp
Average Position of motif in Background30.5 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGCGAAGGCCGGA
-NTCAAGGTCA--
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGCGAAGGCCGGA
--CAAAGGTCAG-
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGCGAAGGCCGGA--
TCGCGAAGGTTGTACT
 A C G T A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CGCGAAGGCCGGA
-----AGGCCTNG
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGCGAAGGCCGGA
-BTCAAGGTCA--
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CGCGAAGGCCGGA-----
----CAGGCCNNGGCCNN
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CGCGAAGGCCGGA
---CTAGGCCT--
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A
A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CGCGAAGGCCGGA---
------GGCGGGAARN
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGCGAAGGCCGGA
---CAAGGHCANV
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGCGAAGGCCGGA-
----CWGGCGGGAA
 A T G C A T C G A G T C A T C G C G T A C G T A A C T G A C T G A G T C A T G C C T A G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A