Information for 5-KAATGACGAATAG (Motif 5)

A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G
Reverse Opposite:
G T A C G C A T G T C A A C G T A C G T A G T C C A T G A G C T G T A C G C T A A G C T A C G T G T C A
p-value:1e-12
log p-value:-2.862e+01
Information Content per bp:1.667
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.7 +/- 27.1bp
Average Position of motif in Background51.8 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0108.1_Atf1_2/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:KAATGACGAATAG-
GAATGACGAATAAC
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

Atf1/MA0604.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:KAATGACGAATAG
--ATGACGTA---
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G
A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:KAATGACGAATAG--
---TGATTRATGGCY
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-KAATGACGAATAG-
ACCGTGACTAATTNN
 A C G T A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:KAATGACGAATAG-
--ATGATKGATGRC
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:KAATGACGAATAG
-CATGAC------
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G
A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0061.1_Hoxb6/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----KAATGACGAATAG
NNNGTAATTACNNATA-
 A C G T A C G T A C G T A C G T A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:KAATGACGAATAG
---TGATTGATGA
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KAATGACGAATAG
NCGTGACN-----
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:KAATGACGAATAG
-AAAGRGGAAGTG
 A C G T G T C A T C G A C G A T A C T G C T G A G T A C C T A G T C G A C G T A C A G T C G T A C A T G
A C G T C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G