Information for 3-ATGCCAGCTCCTT (Motif 3)

C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
Reverse Opposite:
T C G A G C T A C T A G A C T G C T G A A C T G G T A C A C G T A C T G A T C G G T A C G C T A A C G T
p-value:1e-15
log p-value:-3.492e+01
Information Content per bp:1.770
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif50.6
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets51.9 +/- 24.4bp
Average Position of motif in Background57.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATGCCAGCTCCTT
ATGCCAGACN---
 C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATGCCAGCTCCTT
ATGCCAACC----
 C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ATGCCAGCTCCTT
NTATTGACAGCTNNTT
 A C G T A C G T A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATGCCAGCTCCTT
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PH0105.1_Meis3/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ATGCCAGCTCCTT
GTATTGACAGGTNNTT
 A C G T A C G T A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0104.1_Meis2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATGCCAGCTCCTT
NTATTGACAGGTNNTN
 A C G T A C G T A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATGCCAGCTCCTT
GGATTGACAGGTCNTT
 A C G T A C G T A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATGCCAGCTCCTT
GTATTGACAGCTNNTT
 A C G T A C G T A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATGCCAGCTCCTT
NNATTGACAGGTGCTT
 A C G T A C G T A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATGCCAGCTCCTT
CGTGCCAAG-----
 A C G T C G T A C A G T A C T G A T G C A G T C C G T A A C T G A G T C A G C T G T A C A G T C C A G T A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T