Information for 5-AGGAVAAATCCCCTAB (Motif 19)

C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
Reverse Opposite:
T A C G A C G T C T G A A C T G C T A G C T A G C T A G T G C A C G A T A C G T A C G T A G T C A C G T A G T C A G T C A G C T
p-value:1e-8
log p-value:-1.893e+01
Information Content per bp:1.772
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 30.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGGAVAAATCCCCTAB
--GGGAAATCCCCN--
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGAVAAATCCCCTAB
-GGGGGAATCCCC---
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGAVAAATCCCCTAB
-AGGGGAATCCCCT--
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGGAVAAATCCCCTAB
TGGAAAA---------
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGGAVAAATCCCCTAB
-AGGGGATTCCCCT--
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGGAVAAATCCCCTAB
---GGAAATCCCC---
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AGGAVAAATCCCCTAB
---GGAAATTCCC---
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----AGGAVAAATCCCCTAB
ATTTACGACAAATAGC----
 A C G T A C G T A C G T A C G T C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C A C G T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGGAVAAATCCCCTAB
AATGGAAAAT--------
 A C G T A C G T C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AGGAVAAATCCCCTAB
---GGAAATTCCC---
 C T G A A C T G A C T G C G T A T A C G G T C A C G T A C G T A A C G T A G T C A G T C A G T C A G T C G A C T C G T A A C G T
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T