Information for 4-GAATGATGAA (Motif 3)

A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A
Reverse Opposite:
A C G T A C G T A G T C C G T A A G C T A G T C C G T A A G C T C G A T A G T C
p-value:1e-13
log p-value:-3.169e+01
Information Content per bp:1.903
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.84%
Number of Background Sequences with motif75.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets60.7 +/- 22.9bp
Average Position of motif in Background53.1 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GAATGATGAA--
--ATGATGCAAT
 A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T A C G T
A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GAATGATGAA--
--MTGATGCAAT
 A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T A C G T
A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

ATF4/MA0833.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAATGATGAA---
GGATGATGCAATA
 A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T A C G T A C G T
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GAATGATGAA-
NNCTNAATTATGANN
 A C G T A C G T A C G T A C G T A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GAATGATGAA
TTTGATTGATGN-
 A C G T A C G T A C G T A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAATGATGAA
TGATTGATGA-
 A C G T A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GAATGATGAA---
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAATGATGAA-
TGAATTATGCAT
 A C G T A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PB0108.1_Atf1_2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAATGATGAA----
GAATGACGAATAAC
 A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T A C G T A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GAATGATGAA----
--ATGATKGATGRC
 A C T G C G T A C T G A A C G T A C T G C T G A A C G T A C T G G T C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C