Information for 13-TGTCWKACAYSKGTSA (Motif 29)

A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A A G T C G T C A A T G C C T G A A C G T A C T G C G A T T G A C C G A T A C T G C T G A A G T C C G T A
p-value:1e-1
log p-value:-4.512e+00
Information Content per bp:1.846
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TGTCWKACAYSKGTSA
----TGACACCTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

PKNOX1/MA0782.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TGTCWKACAYSKGTSA
----TGACACCTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

TGIF2/MA0797.1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TGTCWKACAYSKGTSA
----TGACAGCTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
A C G T A C G T A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGTCWKACAYSKGTSA
CTGTCTGTCACCT----
 A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGTCWKACAYSKGTSA
----TGACAGCTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
A C G T A C G T A C G T A C G T G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGTCWKACAYSKGTSA
TGTCTGDCACCT----
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGTCWKACAYSKGTSA
NTGTCAN----------
 A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TGTCWKACAYSKGTSA
-----AACACGTGTT-
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGTCWKACAYSKGTSA
AGGTCATGCAAAGGTCA
 A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGTCWKACAYSKGTSA
NCTGTCAATCAN------
 A C G T A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A C G T A T G C C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T