Information for 5-TTTAAATAAASTGTCT (Motif 6)

A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T
Reverse Opposite:
C G T A C T A G C T G A A G T C C G T A T A G C A C G T A C G T G A C T G T C A A C G T G A C T A C G T C G T A C G T A C G T A
p-value:1e-16
log p-value:-3.885e+01
Information Content per bp:1.800
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.1 +/- 30.0bp
Average Position of motif in Background48.4 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTTAAATAAASTGTCT
ATTTGAATT--------
 A C G T A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TTTAAATAAASTGTCT--
---NNATNAATTGTTTNN
 A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T A C G T A C G T
A C G T A C G T A C G T G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TTTAAATAAASTGTCT
---AAATTAATTAATC
 A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T
A C G T A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TTTAAATAAASTGTCT
------CCAACTGCCA
 A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TTTAAATAAASTGTCT--
--AANTTCAAGTGGCTTN
 A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T A C G T A C G T
A C G T A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TTTAAATAAASTGTCT----
---GGAAAAATTGTTAGGAA
 A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TTTAAATAAASTGTCT--
--AATNTTAAGTGGNTNN
 A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T A C G T A C G T
A C G T A C G T C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PB0080.1_Tbp_1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TTTAAATAAASTGTCT
TCTTTATATATAAATA----
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A A C G T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TTTAAATAAASTGTCT--
--AAATTCAAGTGGNTTN
 A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T A C G T A C G T
A C G T A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PB0001.1_Arid3a_1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TTTAAATAAASTGTCT
NNNTTTTAATTAANNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A C G T A A C G T C G T A G T C A C G T A A T C G A C G T C T A G A G C T A G T C C G A T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C A C G T A C G T A C G T