Information for 4-GATCAGGCTTTTGACC (Motif 4)

C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C
Reverse Opposite:
C A T G A T C G A G C T A G T C C G T A C T G A T C G A G T C A C T A G A G T C G A T C A C G T A C T G G C T A C A G T A G T C
p-value:1e-17
log p-value:-3.973e+01
Information Content per bp:1.748
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.8 +/- 28.2bp
Average Position of motif in Background25.5 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GATCAGGCTTTTGACC
---CAAGCTT------
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GATCAGGCTTTTGACC----
-------CNNTTGACCTTTG
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GATCAGGCTTTTGACC-
---NAGGTCANTGACCT
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C A C G T
A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:GATCAGGCTTTTGACC--
---------NTTGGCANN
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.50
Offset:11
Orientation:reverse strand
Alignment:GATCAGGCTTTTGACC-
-----------TGACCT
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GATCAGGCTTTTGACC---
----TGGACTTTGNNCTCN
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GATCAGGCTTTTGACC-------
------NNANTTGACCCCTNNNN
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.49
Offset:10
Orientation:forward strand
Alignment:GATCAGGCTTTTGACC
----------TTGGCA
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NRF1/MA0506.1/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GATCAGGCTTTTGACC
TGCGCAGGCGC------
 A C G T C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GATCAGGCTTTTGACC--
--ATTGGACTTTGACCCC
 C T A G G T C A C G A T A G T C C G T A C A T G A C T G A G T C A C G T A C G T A G C T A C G T A C T G T C G A A T G C G A T C A C G T A C G T
A C G T A C G T C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C