Information for 13-AGTGKCATCATGTCCA (Motif 23)

C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G C T A G C T G A A G T C C G T A A C G T A C T G C G T A A C G T A T C G G T A C A G T C T C G A A G T C A G C T
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.763
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.6 +/- 34.3bp
Average Position of motif in Background50.4 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGTGKCATCATGTCCA
NAGGTCACNNTGACC-
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGTGKCATCATGTCCA
-AGGTCACCCTGACCT
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

JUN/MA0488.1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGTGKCATCATGTCCA
-ATGACATCATCNN--
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
A C G T T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGTGKCATCATGTCCA
-GGGTCAACGAGTTCA
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
A C G T C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGTGKCATCATGTCCA
--TGGCACCATGCCAA
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PB0059.1_Six6_1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGTGKCATCATGTCCA
AATAGGGTATCATATAT-
 A C G T A C G T C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGTGKCATCATGTCCA
TATGTAAACANG----
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGTGKCATCATGTCCA
-ATTGCATCAT-----
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGTGKCATCATGTCCA
-ATTGCATCAK-----
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A
A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGTGKCATCATGTCCA-
AAGGTCACGGTGACCTG
 C T G A C T A G A C G T A C T G A C T G A T G C C G T A C G A T A G T C G T C A C G A T T C A G A G C T A G T C A G T C C G T A A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G