Information for 8-RATGCCCTCKTGA (Motif 20)

C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A
Reverse Opposite:
A C G T A G T C G C T A G T C A A C T G C G T A A C T G A C T G A C T G A G T C C G T A A G C T A G T C
p-value:1e-9
log p-value:-2.258e+01
Information Content per bp:1.916
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.0 +/- 16.3bp
Average Position of motif in Background59.2 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:RATGCCCTCKTGA
-ATGCCCACC---
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A
A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:RATGCCCTCKTGA----
--TGACCTTTTGACCTC
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RATGCCCTCKTGA
--TGACCTYA---
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RATGCCCTCKTGA----
-TTGACCTTTTGACCTT
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Mitf/MA0620.1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:RATGCCCTCKTGA--
-----NCACGTGACN
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

Rarb/MA0857.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RATGCCCTCKTGA-----
--TGACCTTTTGACCTTT
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RATGCCCTCKTGA
--TGACCYCT---
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RATGCCCTCKTGA
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RATGCCCTCKTGA
-ATGCCAACC---
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RATGCCCTCKTGA
GCNGCCATCTTG-
 C T A G C T G A A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C G A T A C T G C G T A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T