Information for 6-CTGACAAACAGCT (Motif 16)

A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
Reverse Opposite:
C T G A A T C G A G T C A C G T A T C G C G A T A C G T C G A T A C T G G C A T G T A C G T C A A T C G
p-value:1e-10
log p-value:-2.315e+01
Information Content per bp:1.681
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif106.7
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets46.6 +/- 27.5bp
Average Position of motif in Background54.5 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTGACAAACAGCT
SCTGTCAVTCAV--
 A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTGACAAACAGCT
NCTGTCAATCAN--
 A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGACAAACAGCT
GSCTGTCACTCA---
 A C G T A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGACAAACAGCT
TTGACAG------
 A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTGACAAACAGCT
RHTGWCAR------
 A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTGACAAACAGCT
AGGTGNCAGACAG--
 A C G T A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGACAAACAGCT
VGCTGWCAVB-----
 A C G T A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTGACAAACAGCT
ARNTGACA-------
 A C G T A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTGACAAACAGCT
AGGTGHCAGACA---
 A C G T A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGACAAACAGCT
GCTGTCAA------
 A C G T A T G C A C G T A C T G C G T A T G A C G C T A T G C A G C T A A T G C G T C A T C A G T A G C G A C T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T