Information for 2-CCTGTTAGGTCAG (Motif 3)

A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
Reverse Opposite:
T A G C A G C T A C T G G T C A G T A C A G T C C G A T T C G A G T C A A T G C C T G A A C T G A T C G
p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.797
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets53.5 +/- 30.3bp
Average Position of motif in Background51.0 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCTGTTAGGTCAG
----TRAGGTCA-
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CCTGTTAGGTCAG
------AGGTCA-
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCTGTTAGGTCAG
GCTGTCAA-----
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTGTTAGGTCAG
GCTGTG-------
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CCTGTTAGGTCAG
-----AAGGTCAC
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CCTGTTAGGTCAG---
-----CAGGTAAGTAT
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCTGTTAGGTCAG
VGCTGWCAVB----
 A C G T A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCTGTTAGGTCAG
GGTCANYTGAGGWCA-
 A C G T A C G T A C G T A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CCTGTTAGGTCAG--------
------AGGTCACCCTGACCT
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCTGTTAGGTCAG
--ATCAAGGTCA-
 A T G C A G T C A G C T A T C G A C G T A G C T C G T A A C T G A C T G A C G T G T A C C T G A A T C G
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T